STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5000TIGRFAM: membrane-bound dehydrogenase domain protein; PFAM: cytochrome c class I; KEGG: bte:BTH_II0881 mulitcopper oxidase domain- containing protein. (749 aa)    
Predicted Functional Partners:
Slin_3562
KEGG: mxa:MXAN_5541 cytochrome c oxidase, cbb3- type, subunit I/II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.984
Slin_1261
Hypothetical protein.
     0.711
Slin_0965
TIGRFAM: heme-binding protein; KEGG: pca:Pcar_0624 L-sorbosone dehydrogenase.
  
     0.684
Slin_6210
Heme-binding protein; KEGG: scl:sce1810 putative phosphohydrolase; TIGRFAM: heme-binding protein; PFAM: PBS lyase HEAT domain protein repeat- containing protein; SMART: PBS lyase HEAT domain protein repeat- containing protein.
  
     0.675
Slin_4998
PFAM: cytochrome c class I; KEGG: mfa:Mfla_1432 cytochrome c, class I.
 
    
0.643
Slin_1223
PFAM: lipolytic protein G-D-S-L family; KEGG: pat:Patl_0828 lipolytic enzyme, G-D-S-L.
  
     0.617
Slin_0602
KEGG: cak:Caul_0966 hypothetical protein.
 
     0.612
Slin_4999
Hypothetical protein; KEGG: ACER1, ASAH3; alkaline ceramidase 1; K01441 N-acylsphingosine amidohydrolase.
       0.596
Slin_1558
KEGG: smt:Smal_1419 hypothetical protein.
 
     0.592
Slin_5004
Hypothetical protein.
 
  
 0.583
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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