STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5020PFAM: protein of unknown function DUF214; KEGG: mms:mma_3208 ABC-type transport system, permease component. (418 aa)    
Predicted Functional Partners:
Slin_0698
KEGG: aeh:Mlg_1198 hypothetical protein.
 
  
 0.792
Slin_4817
Sigma 54 interacting domain protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1200 ABC transporter related.
 
   0.737
Slin_5019
PFAM: GCN5-related N-acetyltransferase; KEGG: azo:azo3635 acetyltransferase.
       0.606
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
       0.602
Slin_2427
Hypothetical protein.
  
     0.419
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.