STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5061PFAM: RagB/SusD domain protein. (529 aa)    
Predicted Functional Partners:
atpE
ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.902
Slin_5062
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
 
     0.896
Slin_5060
PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: sfu:Sfum_1623 ASPIC/UnbV domain protein.
 
 
   0.808
Slin_2991
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
     0.692
Slin_5055
PFAM: phosphoesterase PA-phosphatase related; KEGG: nmu:Nmul_A0927 phosphoesterase, PA- phosphatase related.
 
     0.659
Slin_3980
PFAM: FG-GAP repeat protein; KEGG: sde:Sde_2997 hypothetical protein.
  
 
   0.651
Slin_5057
PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: sfu:Sfum_1623 ASPIC/UnbV domain protein.
  
 
   0.634
Slin_5056
PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.
 
 
   0.629
Slin_0021
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
 
     0.618
Slin_3029
PFAM: ASPIC/UnbV domain protein; KEGG: swd:Swoo_1678 ASPIC/UnbV domain-containing protein.
  
 
   0.616
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.