STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5064TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: hypothetical protein. (853 aa)    
Predicted Functional Partners:
Slin_5071
PFAM: protein of unknown function DUF820; KEGG: scl:sce4139 hypothetical protein.
  
     0.622
Slin_0249
Hypothetical protein; KEGG: scl:sce6762 putative secreted protein.
  
     0.607
Slin_3372
KEGG: gur:Gura_0126 hypothetical protein.
  
     0.561
Slin_5627
Anthranilate phosphoribosyltransferase-like protein; KEGG: similar to phosphoribosylanthranilate transferase.
  
    0.549
Slin_3426
KEGG: hypothetical protein.
  
     0.535
Slin_4945
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; Tetratricopeptide TPR_2 repeat protein; KEGG: hypothetical protein; K03640 peptidoglycan- associated lipoprotein.
 
   0.510
Slin_4747
PFAM: Conserved TM helix repeat-containing protein; KEGG: psa:PST_2043 CmpX protein.
  
     0.503
Slin_3520
Hypothetical protein.
  
 
   0.496
Slin_5403
KEGG: cps:CPS_0639 hypothetical protein.
  
    0.495
Slin_1311
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: hypothetical protein; K03640 peptidoglycan- associated lipoprotein.
  
 
   0.489
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.