STRINGSTRING
Slin_5066 protein (Spirosoma linguale) - STRING interaction network
"Slin_5066" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5066TonB-dependent receptor plug (1001 aa)    
Predicted Functional Partners:
Slin_5609
PDZ/DHR/GLGF domain-containing protein (421 aa)
   
          0.726
Slin_2230
Hypothetical protein (417 aa)
   
          0.725
Slin_1648
Hypothetical protein (124 aa)
   
          0.715
Slin_5679
Hypothetical protein (91 aa)
   
          0.629
Slin_1582
TonB-dependent receptor plug (853 aa)
   
          0.619
Slin_5680
Hypothetical protein (125 aa)
   
          0.615
Slin_0540
Fatty acid hydroxylase (288 aa)
   
          0.614
Slin_4583
acyl-ACP desaturase (325 aa)
   
          0.587
Slin_0208
Short-chain dehydrogenase/reductase SDR (263 aa)
   
          0.582
Slin_5081
Hypothetical protein (204 aa)
   
          0.581
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (9%) [HD]