STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5066PFAM: TonB-dependent receptor plug; KEGG: vfm:VFMJ11_A0370 hemin receptor. (1001 aa)    
Predicted Functional Partners:
Slin_0540
PFAM: fatty acid hydroxylase; KEGG: tgr:Tgr7_1960 sterol desaturase-related protein.
  
     0.598
Slin_2230
KEGG: smt:Smal_1348 hypothetical protein.
  
     0.523
Slin_2613
PFAM: protein of unknown function DUF1572.
  
     0.456
Slin_5065
PFAM: amino acid permease-associated region; KEGG: xac:XAC3079 cationic amino acid transporter.
       0.455
Slin_5067
PFAM: oxidoreductase domain protein; KEGG: mlo:mll4991 myo-inositol dehydrogenase (IdhA).
  
    0.455
Slin_5659
KEGG: hypothetical protein.
 
     0.444
Slin_5609
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: sdn:Sden_1685 hypothetical protein.
  
     0.443
Slin_5658
PFAM: peptidase S45 penicillin amidase; KEGG: reu:Reut_A1841 penicillin amidase.
 
     0.439
Slin_1648
Hypothetical protein.
  
     0.417
Slin_1136
PFAM: TonB-dependent receptor; KEGG: hypothetical protein.
  
    0.416
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.