STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5089PFAM: Biopolymer transport protein ExbD/TolR; KEGG: abu:Abu_0380 biopolymer transport protein ExbD. (178 aa)    
Predicted Functional Partners:
Slin_5087
PFAM: MotA/TolQ/ExbB proton channel; KEGG: hypothetical protein.
 
 
 0.981
Slin_5092
KEGG: ade:Adeh_4006 ABC transporter, periplasmic phosphate binding protein.
 
  
 0.952
Slin_5090
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.950
Slin_5093
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; Sel1 domain protein repeat-containing protein; KEGG: gme:Gmet_1506 tetratricopeptide TPR_4.
 
   
 0.882
Slin_5938
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_1436 MotA/TolQ/ExbB proton channel.
  
 
 0.813
Slin_5091
Hypothetical protein.
       0.773
Slin_3521
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dds:Ddes_2085 TonB family protein.
 
 
 0.760
Slin_5088
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pca:Pcar_1506 biopolymer transport protein.
 
   
0.752
Slin_4799
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: rfe:RF_0310 TPR repeat-containing protein.
 
 
   0.705
Slin_4418
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: noc:Noc_0395 hypothetical protein.
 
 
 0.681
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.