STRINGSTRING
Slin_5141 protein (Spirosoma linguale) - STRING interaction network
"Slin_5141" - ECF subfamily RNA polymerase sigma-24 subunit in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5141ECF subfamily RNA polymerase sigma-24 subunit (196 aa)    
Predicted Functional Partners:
Slin_5140
Hypothetical protein (346 aa)
              0.779
Slin_5603
ECF subfamily RNA polymerase sigma-24 subunit (195 aa)
   
          0.778
Slin_6312
ECF subfamily RNA polymerase sigma-24 subunit (162 aa)
   
          0.773
Slin_1017
ECF subfamily RNA polymerase sigma-24 subunit (200 aa)
   
          0.769
Slin_5961
ECF subfamily RNA polymerase sigma-24 subunit (171 aa)
   
          0.731
Slin_5143
Hypothetical protein (182 aa)
              0.709
Slin_5142
Hypothetical protein (107 aa)
              0.580
Slin_5657
ECF subfamily RNA polymerase sigma-24 subunit (194 aa)
   
          0.576
Slin_5139
Glutamate--ammonia ligase (457 aa)
         
  0.573
Slin_6285
anti-FecI sigma factor FecR (333 aa)
   
 
  0.570
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (11%) [HD]