STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5203PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: hypothetical protein; K03640 peptidoglycan- associated lipoprotein. (668 aa)    
Predicted Functional Partners:
Slin_4418
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: noc:Noc_0395 hypothetical protein.
 
 
 0.933
Slin_5600
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: mxa:MXAN_6246 OmpA domain-containing protein.
 
 
0.931
Slin_1781
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: xca:xccb100_4142 TolB-like protein.
 
 
0.930
Slin_4417
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.919
Slin_2038
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; SMART: Tetratricopeptide repeat; Sel1 domain protein repeat-containing protein; KEGG: hypothetical protein.
 
  
 0.900
Slin_5521
SMART: Tetratricopeptide repeat; KEGG: hypothetical protein.
 
  
 0.862
Slin_2013
KEGG: tgr:Tgr7_2227 hypothetical protein.
 
  
 0.852
Slin_5618
KEGG: hypothetical protein.
 
 
 
 0.844
Slin_1995
Hypothetical protein; KEGG: ngk:NGK_1616 TonB.
 
 
 
 0.824
Slin_5378
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: noc:Noc_0610 TonB-like protein.
 
 
 
 0.821
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.