STRINGSTRING
Slin_5237 protein (Spirosoma linguale) - STRING interaction network
"Slin_5237" - NUDIX hydrolase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5237NUDIX hydrolase (150 aa)    
Predicted Functional Partners:
Slin_5236
Hypothetical protein (111 aa)
              0.731
Slin_5238
Hypothetical protein (150 aa)
              0.686
Slin_5235
Hypothetical protein (425 aa)
 
          0.611
Slin_1463
NUDIX hydrolase (165 aa)
   
          0.599
Slin_5097
Hypothetical protein (727 aa)
   
          0.563
Slin_2543
Hypothetical protein (607 aa)
   
          0.561
Slin_2001
Hypothetical protein (500 aa)
   
          0.549
Slin_0194
MarR family transcriptional regulator (155 aa)
   
          0.540
Slin_3007
Patatin (331 aa)
   
          0.467
Slin_2257
Hypothetical protein (831 aa)
   
          0.459
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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