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Slin_5292 protein (Spirosoma linguale) - STRING interaction network
"Slin_5292" - Short-chain dehydrogenase/reductase SDR in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5292Short-chain dehydrogenase/reductase SDR (300 aa)    
Predicted Functional Partners:
Slin_5293
Hypothetical protein (82 aa)
              0.763
Slin_5294
Succinate dehydrogenase and fumarate reductase iron-sulfur protein (246 aa)
              0.592
Slin_3231
DNA topoisomerase (365 aa)
 
          0.576
Slin_5296
Catalase (287 aa)
 
        0.527
Slin_3987
Short-chain dehydrogenase/reductase SDR (261 aa)
   
 
 
0.478
Slin_3404
Short-chain dehydrogenase/reductase SDR (257 aa)
   
 
 
0.477
Slin_6198
Short-chain dehydrogenase/reductase SDR (260 aa)
   
 
 
0.475
Slin_5467
Short-chain dehydrogenase/reductase SDR (305 aa)
   
 
 
0.473
Slin_1373
3-oxoacyl-ACP reductase (248 aa)
   
 
 
0.464
Slin_0401
Short-chain dehydrogenase/reductase SDR (245 aa)
       
 
0.454
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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