STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5353Hypothetical protein. (51 aa)    
Predicted Functional Partners:
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: predicted protein; Belongs to the bacterial ribosomal protein bL33 family.
 
 
 
 0.846
Slin_3223
TIGRFAM: gliding motility-associated protein GldM.
  
     0.672
Slin_2671
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: structure-specific recognition protein, putative; K09272 structure-specific recognition protein 1.
  
     0.671
rplY
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
 
   0.619
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: bpt:Bpet3313 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.618
Slin_4064
KEGG: dal:Dalk_1888 ribosomal protein L17.
  
     0.605
Slin_4396
PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: bba:Bd0225 hypothetical protein.
  
     0.604
Slin_5837
PFAM: 4'-phosphopantetheinyl transferase; KEGG: aha:AHA_1313 4'- phosphopantetheinyltransferase family protein; Belongs to the P-Pant transferase superfamily.
  
     0.598
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
 
   0.596
rpmJ
TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: hypothetical protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
   0.592
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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