STRINGSTRING
bshC protein (Spirosoma linguale) - STRING interaction network
"bshC" - Hypothetical protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bshCHypothetical protein (515 aa)    
Predicted Functional Partners:
Slin_0661
LmbE family protein (239 aa)
 
     
  0.874
Slin_3484
Group 1 glycosyl transferase (379 aa)
 
     
  0.781
Slin_0161
Hypothetical protein (143 aa)
   
     
  0.775
Slin_1599
ATP-dependent Clp protease adaptor protein ClpS (92 aa)
   
          0.732
Slin_4060
FAD-dependent pyridine nucleotide-disulfide oxidoreductase (334 aa)
   
          0.731
Slin_5361
5-formyltetrahydrofolate cyclo-ligase (191 aa)
              0.720
Slin_5948
Hypothetical protein (204 aa)
   
          0.655
rimO
MiaB-like tRNA modifying protein YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 (437 aa)
 
          0.655
Slin_1344
Hypothetical protein (355 aa)
   
          0.653
Slin_1645
Hypothetical protein (300 aa)
   
          0.649
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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