STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bshCPFAM: protein of unknown function UCP012535; KEGG: mxa:MXAN_6193 hypothetical protein; Belongs to the BshC family. (515 aa)    
Predicted Functional Partners:
Slin_0161
PFAM: protein of unknown function DUF1094; Belongs to the UPF0403 family.
  
   
 0.800
Slin_0661
PFAM: LmbE family protein; KEGG: hypothetical protein.
 
   
 0.798
Slin_3484
PFAM: glycosyl transferase group 1; KEGG: hypothetical protein.
  
   
 0.783
Slin_1645
KEGG: mxa:MXAN_6196 hypothetical protein.
  
     0.718
Slin_4879
Hypothetical protein.
  
     0.717
Slin_1077
KEGG: mxa:MXAN_6196 hypothetical protein.
  
     0.699
Slin_5833
Hypothetical protein.
  
  
 0.692
Slin_5361
TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: ses:SARI_04589 putative ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.679
Slin_3613
KEGG: mxa:MXAN_6196 hypothetical protein.
  
     0.677
Slin_2860
KEGG: mxa:MXAN_6196 hypothetical protein.
  
     0.667
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.