STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5375PFAM: sulfatase; KEGG: hypothetical protein. (560 aa)    
Predicted Functional Partners:
Slin_1433
PFAM: protein of unknown function DUF323; KEGG: mxa:MXAN_3662 hypothetical protein.
 
   0.692
Slin_5374
PFAM: glycoside hydrolase family 28; KEGG: Os09g0439400; hypothetical protein; Belongs to the glycosyl hydrolase 28 family.
       0.458
Slin_0901
PFAM: Radical SAM domain protein; KEGG: pzu:PHZ_c2389 hypothetical protein.
 
   0.440
Slin_3063
PFAM: protein of unknown function DUF323; KEGG: glo:Glov_1169 protein of unknown function DUF323.
 
   0.426
Slin_3225
PFAM: protein of unknown function DUF323; KEGG: GD13538 gene product from transcript GD13538- RA.
 
   0.416
Slin_4405
PFAM: protein of unknown function DUF323; KEGG: lch:Lcho_3768 hypothetical protein.
 
   0.413
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.