STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5505TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cbg:CbuG_1197 acriflavin resistance periplasmic protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (375 aa)    
Predicted Functional Partners:
Slin_1020
PFAM: acriflavin resistance protein; KEGG: mca:MCA2131 AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.962
Slin_5504
PFAM: acriflavin resistance protein; KEGG: dol:Dole_1215 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.933
Slin_5506
PFAM: outer membrane efflux protein; KEGG: gur:Gura_3409 outer membrane efflux protein.
 
   0.843
Slin_3233
PFAM: outer membrane efflux protein; KEGG: afr:AFE_3265 outer membrane efflux protein.
  
  0.782
Slin_1203
PFAM: outer membrane efflux protein; KEGG: dal:Dalk_4861 outer membrane efflux protein.
  
  0.776
Slin_2692
PFAM: outer membrane efflux protein; KEGG: sat:SYN_02462 type I secretion outer membrane protein.
  
  0.757
Slin_5507
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: azc:AZC_0735 hypothetical protein.
 
     0.754
Slin_2362
PFAM: outer membrane efflux protein; KEGG: sgl:SG0266 outer membrane channel protein.
  
  0.733
Slin_2351
KEGG: sat:SYN_01010 type I secretion outer membrane protein.
   
  0.722
Slin_2617
PFAM: outer membrane efflux protein; KEGG: mxa:MXAN_6176 outer membrane efflux protein.
   
  0.722
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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