STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5506PFAM: outer membrane efflux protein; KEGG: gur:Gura_3409 outer membrane efflux protein. (451 aa)    
Predicted Functional Partners:
Slin_5505
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cbg:CbuG_1197 acriflavin resistance periplasmic protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.843
Slin_5507
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: azc:AZC_0735 hypothetical protein.
       0.812
Slin_5504
PFAM: acriflavin resistance protein; KEGG: dol:Dole_1215 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   0.691
Slin_2956
PFAM: permease YjgP/YjgQ family protein; KEGG: sat:SYN_00415 permease.
  
     0.614
Slin_4434
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dat:HRM2_22410 outer membrane protein (putative surface antigen).
  
     0.601
Slin_1203
PFAM: outer membrane efflux protein; KEGG: dal:Dalk_4861 outer membrane efflux protein.
  
     0.550
Slin_2691
PFAM: secretion protein HlyD family protein; KEGG: pfl:PFL_4126 HlyD family secretion protein.
 
   0.489
Slin_4410
PFAM: secretion protein HlyD family protein; KEGG: vfi:VF_0878 EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component.
 
   0.469
Slin_0008
KEGG: bba:Bd1501 hypothetical protein.
  
     0.468
Slin_0657
PFAM: CBS domain containing protein; KEGG: pha:PSHAa0588 inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase).
 
     0.466
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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