STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5557PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ppu:PP_1817 short chain dehydrogenase. (272 aa)    
Predicted Functional Partners:
Slin_3678
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bcm:Bcenmc03_2495 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.747
Slin_0473
PFAM: O-methyltransferase family 3; KEGG: mxa:MXAN_5983 O-methyltransferase family protein.
 
  
 
 0.691
Slin_6445
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: met:M446_2996 short-chain dehydrogenase/reductase SDR.
  
 
   0.509
Slin_6274
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_6077 oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.508
Slin_5012
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: pca:Pcar_1437 malonyl CoA-acyl carrier protein transacylase.
 
 0.505
Slin_2770
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xcv:XCV1542 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.492
Slin_5413
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll2196 short chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.472
Slin_3188
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dal:Dalk_1753 putative oxidoreductase.
  
     0.461
Slin_5149
3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.423
Slin_3190
PFAM: Beta-ketoacyl synthase; KEGG: sat:SYN_01694 3-oxoacyl-[acyl-carrier- protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.412
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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