STRINGSTRING
Slin_5589 protein (Spirosoma linguale) - STRING interaction network
"Slin_5589" - Phage repressor in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5589Phage repressor (237 aa)    
Predicted Functional Partners:
Slin_6134
Hypothetical protein (187 aa)
   
          0.629
Slin_5590
DNA-directed DNA polymerase (421 aa)
              0.627
Slin_5145
Hypothetical protein (199 aa)
   
          0.618
Slin_4809
phytanoyl-CoA dioxygenase (273 aa)
   
          0.601
Slin_4564
Hypothetical protein (171 aa)
   
          0.552
Slin_5342
Hypothetical protein (426 aa)
   
          0.499
Slin_4961
Hypothetical protein (257 aa)
   
          0.493
Slin_0602
Hypothetical protein (453 aa)
   
          0.471
Slin_3860
O-antigen polymerase (494 aa)
   
          0.464
Slin_5991
Peptidase S8/S53 subtilisin kexin sedolisin (1343 aa)
   
          0.457
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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