STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5623PFAM: oxidoreductase domain protein; KEGG: mlo:mlr7229 glucose-fructose oxidoreductase. (458 aa)    
Predicted Functional Partners:
Slin_6337
PFAM: protein of unknown function DUF1080.
  
     0.661
Slin_0510
PFAM: oxidoreductase domain protein; KEGG: smd:Smed_3325 oxidoreductase domain- containing protein.
  
     0.640
Slin_1177
PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2151 hypothetical protein.
 
     0.604
Slin_5789
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mmw:Mmwyl1_3913 xylose isomerase domain- containing protein.
  
    0.595
Slin_3328
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ara:Arad_2649 hypothetical protein.
  
    0.579
Slin_5622
PFAM: Acetyl xylan esterase; KEGG: yps:YPTB0305 hypothetical protein.
 
     0.575
Slin_1842
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rhi:NGR_b21640 putative sugar phosphate isomerase/epimerase IoIE.
  
    0.562
Slin_1262
TIGRFAM: membrane-bound dehydrogenase domain protein; KEGG: eba:ebA2883 cytochrome c subunit of cbb3 type cytochrome oxidase.
  
     0.526
Slin_1261
Hypothetical protein.
  
     0.516
Slin_0438
PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2159 hypothetical protein.
 
     0.511
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.