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Slin_5647 protein (Spirosoma linguale) - STRING interaction network
"Slin_5647" - TraR/DksA family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5647TraR/DksA family transcriptional regulator (128 aa)    
Predicted Functional Partners:
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (261 aa)
 
          0.729
Slin_4434
Outer membrane protein assembly complex, YaeT protein (865 aa)
   
          0.687
Slin_3124
Hypothetical protein (251 aa)
 
          0.567
Slin_5634
Hypothetical protein (231 aa)
   
          0.566
Slin_1528
Hypothetical protein (984 aa)
   
          0.566
Slin_5646
Hypothetical protein (139 aa)
              0.514
Slin_6028
Phosphoesterase RecJ domain-containing protein (343 aa)
   
          0.497
Slin_1307
Outer membrane assembly lipoprotein YfiO (299 aa)
   
          0.497
Slin_5701
Hypothetical protein (73 aa)
   
          0.491
Slin_4901
Hypothetical protein (328 aa)
   
          0.487
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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