STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5655PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor. (1164 aa)    
Predicted Functional Partners:
Slin_5654
PFAM: RagB/SusD domain protein.
 
 
   0.941
Slin_5656
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pfo:Pfl01_0930 putative FecR.
 
    0.847
Slin_1275
PFAM: RagB/SusD domain protein.
 
 
   0.793
Slin_4318
PFAM: RagB/SusD domain protein.
 
 
   0.773
Slin_4041
PFAM: RagB/SusD domain protein.
 
   0.769
Slin_3391
PFAM: RagB/SusD domain protein.
  
 
   0.763
Slin_0107
PFAM: RagB/SusD domain protein; KEGG: mxa:MXAN_4747 putative lipoprotein.
 
 
   0.744
Slin_4380
PFAM: RagB/SusD domain protein.
 
 
   0.732
Slin_6568
PFAM: RagB/SusD domain protein.
 
 
   0.729
Slin_4783
PFAM: RagB/SusD domain protein.
  
 
   0.669
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.