STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5690SMART: Tetratricopeptide repeat; KEGG: mms:mma_0678 hypothetical protein. (269 aa)    
Predicted Functional Partners:
Slin_5691
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: bmj:BMULJ_02633 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
  
 
 0.605
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.563
Slin_5836
PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; KEGG: hypothetical protein.
   
 0.562
Slin_0458
PFAM: Ankyrin; SMART: Ankyrin; KEGG: pat:Patl_1108 ankyrin.
  
 0.531
Slin_5692
PFAM: Fructosamine/Ketosamine-3-kinase; aminoglycoside phosphotransferase; KEGG: hch:HCH_00321 fructosamine-3-kinase.
       0.485
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.435
Slin_1459
ATP-binding region ATPase domain protein; Molecular chaperone. Has ATPase activity.
   
 0.418
Slin_5709
KEGG: rsh:Rsph17029_3728 HSP90 family molecular chaperone-like protein.
   
 0.418
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.