STRINGSTRING
Slin_5726 protein (Spirosoma linguale) - STRING interaction network
"Slin_5726" - Glycoside hydrolase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5726Glycoside hydrolase (656 aa)    
Predicted Functional Partners:
Slin_4791
Trehalose synthase (1114 aa)
       
    0.932
Slin_3625
Alpha amylase (571 aa)
       
    0.932
Slin_3114
Alpha amylase (579 aa)
       
    0.932
Slin_1747
Glycoside hydrolase family protein (778 aa)
       
    0.905
Slin_1907
Glycoside hydrolase family protein (730 aa)
       
    0.903
Slin_2687
Glycoside hydrolase (677 aa)
         
  0.900
Slin_1258
Glycoside hydrolase (779 aa)
         
  0.900
Slin_3183
PfkB domain-containing protein (297 aa)
         
    0.900
Slin_1895
Beta-galactosidase (454 aa)
         
    0.900
Slin_1088
PfkB domain-containing protein (315 aa)
         
    0.900
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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