STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5755TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: neu:NE0559 TonB-dependent receptor protein. (793 aa)    
Predicted Functional Partners:
Slin_5756
PFAM: Propeptide PepSY amd peptidase M4; PepSY- associated TM helix domain protein; KEGG: tbd:Tbd_0714 hypothetical protein.
 
  
 0.936
Slin_5757
Superfamily I DNA and RNA helicase and helicase subunits-like protein; KEGG: mxa:MXAN_0520 hypothetical protein.
 
     0.660
Slin_4534
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: tbd:Tbd_0909 putative TonB-dependent receptor.
  
     0.568
Slin_1885
Hypothetical protein.
  
     0.560
Slin_1573
PFAM: PepSY-associated TM helix domain protein; KEGG: aav:Aave_3918 PepSY-associated TM helix domain-containing protein.
 
  
 0.526
Slin_3946
PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
 
  
 0.472
Slin_5754
PFAM: Integral membrane protein TerC; KEGG: bba:Bd3076 putative transport protein.
       0.468
Slin_5605
KEGG: she:Shewmr4_3177 hypothetical protein.
 
 
 0.438
Slin_0105
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: sml:Smlt1751 putative transmembrane FecR sensor protein.
 
 
 0.425
Slin_6187
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; peptidase M56 BlaR1; KEGG: slo:Shew_2995 TonB family protein.
 
 
 0.419
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.