STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5809Hypothetical protein; KEGG: sml:Smlt1189 putative oxidoreductase. (43 aa)    
Predicted Functional Partners:
Slin_4950
KEGG: amc:MADE_00435 twin-arginine translocation pathway signal.
  
     0.671
Slin_5805
KEGG: cak:Caul_4605 hypothetical protein.
  
     0.660
Slin_4689
KEGG: cja:CJA_3100 hypothetical protein.
  
     0.626
Slin_6564
KEGG: cja:CJA_3100 hypothetical protein.
  
     0.613
Slin_1890
KEGG: cja:CJA_3100 hypothetical protein.
  
     0.609
Slin_5808
Hypothetical protein.
       0.498
Slin_5810
Hypothetical protein.
       0.436
Slin_6210
Heme-binding protein; KEGG: scl:sce1810 putative phosphohydrolase; TIGRFAM: heme-binding protein; PFAM: PBS lyase HEAT domain protein repeat- containing protein; SMART: PBS lyase HEAT domain protein repeat- containing protein.
  
     0.429
Slin_4690
PFAM: glucose-methanol-choline oxidoreductase; KEGG: pzu:PHZ_c2153 choline dehydrogenase.
  
     0.411
Slin_5811
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: cytochrome c class I; KEGG: scl:sce3278 L-sorbosone dehydrogenase.
 
     0.409
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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