STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5816PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: mes:Meso_0261 oxidoreductase-like. (397 aa)    
Predicted Functional Partners:
Slin_6458
PFAM: oxidoreductase domain protein; KEGG: vei:Veis_1396 oxidoreductase domain- containing protein.
 
     0.579
Slin_5891
KEGG: xfa:XF0992 hypothetical protein.
  
    0.578
Slin_5815
TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: pen:PSEEN2937 nicotinamide mononucleotide transporter PnuC.
       0.552
Slin_0437
PFAM: oxidoreductase domain protein; KEGG: sea:SeAg_B4707 inositol 2-dehydrogenase.
  
     0.524
Slin_0439
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ppr:PBPRB0461 myo-inositol catabolismprotein IolB.
  
    0.466
Slin_1527
PFAM: phosphoesterase PA-phosphatase related; KEGG: mxa:MXAN_0451 PAP2 family protein.
  
     0.428
Slin_3204
PFAM: oxidoreductase domain protein; KEGG: mmw:Mmwyl1_0028 oxidoreductase domain- containing protein.
  
     0.424
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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