STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5861PFAM: HIRAN; KEGG: sfu:Sfum_3936 hypothetical protein. (178 aa)    
Predicted Functional Partners:
Slin_3036
PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
 
 0.627
Slin_2398
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: amc:MADE_02398 putative TonB-dependent receptor.
  
 
 0.610
Slin_4238
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
 
 0.610
Slin_5439
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_0272 TonB-dependent receptor.
  
 
 0.610
Slin_4475
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mxa:MXAN_6044 TonB-dependent receptor.
  
 
 0.592
Slin_5203
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: hypothetical protein; K03640 peptidoglycan- associated lipoprotein.
   
 
 0.589
Slin_2627
PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
 
 0.468
Slin_5087
PFAM: MotA/TolQ/ExbB proton channel; KEGG: hypothetical protein.
  
 
 0.462
Slin_5938
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_1436 MotA/TolQ/ExbB proton channel.
  
 
 0.462
Slin_4648
PFAM: Biopolymer transport protein ExbD/TolR.
  
 
 0.454
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.