STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5872PFAM: integrase family protein; KEGG: she:Shewmr4_1694 phage integrase family protein; Belongs to the 'phage' integrase family. (433 aa)    
Predicted Functional Partners:
Slin_1970
Hypothetical protein; KEGG: dps:DPPA08 related to DNA primase PrmN1 (partial length).
 
  
 0.731
Slin_5870
Transcriptional modulator of MazE/toxin, MazF; KEGG: xfa:XF1862 hypothetical protein.
     
 0.727
Slin_3099
PFAM: integrase family protein; KEGG: seh:SeHA_C1600 phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.725
Slin_5869
Hypothetical protein.
       0.718
Slin_5871
Hypothetical protein.
       0.718
Slin_5054
PFAM: regulatory protein TetR; KEGG: dal:Dalk_2333 transcriptional regulator, TetR family.
  
     0.557
Slin_3094
Hypothetical protein.
 
  
 0.541
Slin_6395
PFAM: regulatory protein TetR; KEGG: dal:Dalk_2333 transcriptional regulator, TetR family.
  
     0.513
Slin_3291
PFAM: integrase family protein; KEGG: shw:Sputw3181_4090 phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.502
Slin_5868
KEGG: ccs:CCNA_00761 hypothetical protein.
       0.484
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.