STRINGSTRING
Slin_5872 protein (Spirosoma linguale) - STRING interaction network
"Slin_5872" - Integrase family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5872Integrase family protein (433 aa)    
Predicted Functional Partners:
Slin_5871
Hypothetical protein (82 aa)
              0.792
Slin_5870
ModF family transcriptional regulator (108 aa)
              0.792
Slin_5869
Hypothetical protein (84 aa)
              0.792
Slin_1970
Hypothetical protein (306 aa)
   
          0.752
Slin_3099
Integrase family protein (441 aa)
   
          0.665
Slin_1953
Integrase family protein (405 aa)
   
          0.643
Slin_3443
Hypothetical protein (952 aa)
   
          0.607
Slin_1176
Hypothetical protein (120 aa)
   
          0.558
Slin_5868
Hypothetical protein (85 aa)
              0.538
Slin_3291
Integrase family protein (450 aa)
   
          0.527
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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