STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5891KEGG: xfa:XF0992 hypothetical protein. (350 aa)    
Predicted Functional Partners:
Slin_5890
PFAM: Fmu (Sun) domain protein; KEGG: vfi:VF_1274 rRNA (cytosine-C(5)-)- methyltransferase RsmF.
     
 0.777
Slin_5816
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: mes:Meso_0261 oxidoreductase-like.
  
    0.578
Slin_5889
KEGG: tcx:Tcr_0976 phosphatase KdsC.
       0.525
Slin_0445
Hypothetical protein.
  
     0.519
Slin_5888
TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: rpb:RPB_4342 adenosylmethionine--8-amino-7- oxononanoate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.513
Slin_5892
Enoyl-(acyl-carrier-protein) reductase (NADH); KEGG: sil:SPO2142 enoyl-(acyl carrier protein) reductase.
     
 0.506
Slin_4520
PFAM: glycoside hydrolase family 9; glycoside hydrolase family 9 domain protein Ig domain protein; polysaccharide deacetylase; KEGG: xac:XAC2522 cellulase.
  
     0.486
Slin_2536
Hypothetical protein; KEGG: pha:PSHAb0414 putative membrane associated hydrolase.
 
     0.468
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.