STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5909KEGG: dol:Dole_1815 hypothetical protein. (128 aa)    
Predicted Functional Partners:
Slin_5910
PFAM: protein of unknown function DUF433; KEGG: rpe:RPE_2627 protein of unknown function DUF433.
 
   
 0.946
Slin_5531
PFAM: protein of unknown function DUF433; KEGG: rpc:RPC_2761 hypothetical protein.
 
   
 0.763
Slin_1154
PFAM: protein of unknown function DUF433; KEGG: rpe:RPE_2627 protein of unknown function DUF433.
 
   
 0.762
Slin_1155
KEGG: rpa:RPA2819 hypothetical protein.
  
     0.759
Slin_3434
PFAM: protein of unknown function DUF433; KEGG: lch:Lcho_4191 hypothetical protein.
 
   
 0.746
Slin_5532
KEGG: rpa:RPA2819 hypothetical protein.
  
     0.743
Slin_4513
PFAM: protein of unknown function DUF433; KEGG: afr:AFE_1367 hypothetical protein.
 
   
 0.742
ilvA
Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
       0.714
Slin_1443
KEGG: rpe:RPE_2423 hypothetical protein.
  
     0.708
Slin_4456
PFAM: YcfA family protein; KEGG: dal:Dalk_0033 YcfA family protein.
  
     0.602
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.