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Slin_5924 protein (Spirosoma linguale) - STRING interaction network
"Slin_5924" - GH3 auxin-responsive promoter in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5924GH3 auxin-responsive promoter (500 aa)    
Predicted Functional Partners:
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) (390 aa)
              0.832
Slin_5923
Hypothetical protein (461 aa)
              0.824
Slin_5922
Hypothetical protein (199 aa)
              0.824
Slin_0656
Alpha/beta hydrolase fold protein (258 aa)
   
          0.768
Slin_5545
Hypothetical protein (165 aa)
   
          0.718
Slin_1306
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (103 aa)
   
          0.707
Slin_5211
Hypothetical protein (333 aa)
   
          0.696
Slin_0367
Hypothetical protein (147 aa)
   
          0.671
Slin_4914
Transketolase (801 aa)
   
          0.653
Slin_3465
Hypothetical protein (350 aa)
   
          0.646
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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