STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_5969TIGRFAM: gliding motility-associated lipoprotein GldH. (158 aa)    
Predicted Functional Partners:
Slin_4895
TIGRFAM: gliding motility-associated lipoprotein GldD.
  
   
 0.808
Slin_5539
Hypothetical protein.
  
   
 0.802
Slin_3224
TIGRFAM: gliding motility-associated protein GldL; KEGG: hypothetical protein.
  
   
 0.797
Slin_4905
TIGRFAM: gliding-associated putative ABC transporter substrate-binding component GldG; PFAM: ABC-type uncharacterized transport system; KEGG: mca:MCA1563 hypothetical protein.
  
   
 0.792
Slin_5515
TIGRFAM: gliding motility-associated lipoprotein GldJ; PFAM: protein of unknown function DUF323; KEGG: hypothetical protein.
  
   
 0.786
Slin_5970
PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: nis:NIS_1417 PAP2 family phosphoesterase.
 
     0.768
Slin_3223
TIGRFAM: gliding motility-associated protein GldM.
  
   
 0.747
Slin_3022
Hypothetical protein.
  
     0.739
Slin_3219
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: hypothetical protein.
  
     0.727
Slin_1599
PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: similar to ubiquitin protein ligase E3 component n-recognin 2; K10626 E3 ubiquitin-protein ligase UBR2; Belongs to the ClpS family.
  
     0.718
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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