STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6036KEGG: gur:Gura_3957 hypothetical protein. (84 aa)    
Predicted Functional Partners:
Slin_1329
PFAM: Protein of unknown function DUF2442; KEGG: gur:Gura_3956 hypothetical protein.
 
     0.786
Slin_1092
KEGG: maq:Maqu_2522 hypothetical protein.
  
     0.775
Slin_1695
KEGG: rpe:RPE_0295 hypothetical protein.
  
     0.775
Slin_6037
PFAM: Protein of unknown function DUF2442.
       0.773
Slin_0045
Hypothetical protein; KEGG: scl:sce8068 putative transposase.
  
     0.569
Slin_6035
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: mch:Mchl_1930 dihydrolipoamide dehydrogenase.
       0.505
Slin_6038
PFAM: peptidase M28; peptidase M20; KEGG: mxa:MXAN_0100 M28D family peptidase.
       0.484
Slin_4456
PFAM: YcfA family protein; KEGG: dal:Dalk_0033 YcfA family protein.
  
     0.408
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.