STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6063KEGG: vfm:VFMJ11_2525 hypothetical protein. (173 aa)    
Predicted Functional Partners:
Slin_6062
PFAM: Curli production assembly/transport component CsgF; KEGG: bur:Bcep18194_B2587 hypothetical protein.
  
  
 0.921
Slin_6061
PFAM: Curli production assembly/transport component CsgG; KEGG: pha:PSHAb0194 putative assembly or transport protein for curli synthesis.
  
 
 0.909
Slin_4730
PFAM: Curli production assembly/transport component CsgG; KEGG: pha:PSHAb0194 putative assembly or transport protein for curli synthesis.
  
 
 0.821
Slin_4729
PFAM: Curli production assembly/transport component CsgF; KEGG: bur:Bcep18194_B2587 hypothetical protein.
  
  
 0.749
Slin_6060
PFAM: WD40 domain protein beta Propeller; KEGG: mxa:MXAN_0346 beta-propeller repeat- containing to-pal system protein TolB.
       0.454
Slin_6064
PFAM: Curlin associated repeat protein; KEGG: shm:Shewmr7_3300 curlin associated repeat protein.
     
 0.427
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.