STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6107PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: hypothetical protein. (359 aa)    
Predicted Functional Partners:
Slin_6105
KEGG: mxa:MXAN_5665 hypothetical protein.
 
  
 0.959
Slin_6106
Hypothetical protein.
       0.812
Slin_2939
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: nis:NIS_0400 AAA family ATPase.
 
  
 0.768
Slin_4278
KEGG: afw:Anae109_4421 hypothetical protein.
 
  
 0.765
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
    0.752
Slin_1323
PFAM: protein of unknown function DUF58; KEGG: pat:Patl_3494 hypothetical protein.
 
  
 0.731
Slin_0805
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: acp:A2cp1_4423 ATPase associated with various cellular activities AAA_3.
 
  
 0.638
Slin_1324
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pat:Patl_3493 ATPase.
 
  
 0.617
Slin_0326
Mg-chelatase subunit ChlI-like protein; KEGG: Os03g0811100; hypothetical protein.
  
 
 0.608
Slin_6104
Hypothetical protein.
       0.590
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.