STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6139Hypothetical protein. (563 aa)    
Predicted Functional Partners:
Slin_6137
PFAM: blue (type 1) copper domain protein; KEGG: xfm:Xfasm12_1745 electron transfer protein azurin I.
 
     0.891
Slin_1880
PFAM: blue (type 1) copper domain protein; KEGG: rpe:RPE_4871 L-sorbosone dehydrogenase.
 
     0.781
Slin_4773
PFAM: cytochrome c class I; KEGG: tbd:Tbd_2726 cytochrome c transmembrane protein.
 
     0.775
Slin_1171
Glucose/sorbosone dehydrogenase-like protein; KEGG: csa:Csal_0781 L-sorbosone dehydrogenase.
  
     0.744
Slin_3134
KEGG: aav:Aave_1504 cytochrome c, class I.
 
     0.743
Slin_3024
Hypothetical protein.
  
     0.681
Slin_5487
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: bid:Bind_0907 cytochrome c class I.
  
     0.662
Slin_6210
Heme-binding protein; KEGG: scl:sce1810 putative phosphohydrolase; TIGRFAM: heme-binding protein; PFAM: PBS lyase HEAT domain protein repeat- containing protein; SMART: PBS lyase HEAT domain protein repeat- containing protein.
  
     0.661
Slin_4518
KEGG: ank:AnaeK_4339 hypothetical protein.
  
     0.624
Slin_6138
TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: bms:BR1524 CsaA protein.
       0.619
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.