STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6174Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: hypothetical protein. (212 aa)    
Predicted Functional Partners:
Slin_6175
PFAM: protein of unknown function DUF81; KEGG: amc:MADE_00086 hypothetical protein.
 
     0.600
Slin_6176
KEGG: tbd:Tbd_2628 hypothetical protein.
 
     0.585
Slin_5021
PFAM: response regulator receiver; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: response regulator receiver; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: mxa:MXAN_4049 serine/threonine protein kinase/response regulator/adenylate cyclase.
  
 0.534
Slin_3562
KEGG: mxa:MXAN_5541 cytochrome c oxidase, cbb3- type, subunit I/II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.460
Slin_6177
PFAM: beta-lactamase domain protein; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: metallo-beta-lactamase superfamily protein; K01069 hydroxyacylglutathione hydrolase.
 
    0.449
Slin_2640
Hypothetical protein.
    
 0.440
Slin_3557
KEGG: ccv:CCV52592_0899 hypothetical protein.
 
     0.406
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.