STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6192Demethylmenaquinone methyltransferase-like protein; KEGG: rlt:Rleg2_3664 dimethylmenaquinone methyltransferase. (314 aa)    
Predicted Functional Partners:
Slin_6193
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pfo:Pfl01_4123 galactonate dehydratase.
 
    0.846
Slin_4810
PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
     0.766
Slin_4811
KEGG: hypothetical protein.
  
     0.763
Slin_6070
Galactonate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rlt:Rleg2_3672 mandelate racemase/muconate lactonizing protein.
 
    0.745
Slin_3946
PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
     0.740
Slin_3947
KEGG: hypothetical protein.
  
     0.735
Slin_3968
KEGG: ara:Arad_7947 L-seryl-tRNA(ser) selenium transferase protein.
 
     0.623
Slin_3964
KEGG: oan:Oant_2990 pyridoxal phosphate-dependent enzyme, putative.
 
     0.605
Slin_3965
PFAM: amidohydrolase; KEGG: azc:AZC_2016 dihydroorotase.
 
     0.576
Slin_0093
PFAM: Bile acid:sodium symporter; KEGG: aci:ACIAD3583 putative transporter; putative sodium/bile acid transporter family protein.
 
     0.574
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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