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Slin_6250 protein (Spirosoma linguale) - STRING interaction network
"Slin_6250" - Bifunctional deaminase-reductase domain-containing protein in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6250Bifunctional deaminase-reductase domain-containing protein (182 aa)    
Predicted Functional Partners:
Slin_6249
Hypothetical protein (259 aa)
 
          0.709
thyA
Thymidylate synthase; Provides the sole de novo source of dTMP for DNA biosynthesis (264 aa)
   
   
  0.682
Slin_0543
DNA polymerase I (1024 aa)
   
   
  0.655
Slin_3447
Phospholipid/glycerol acyltransferase (188 aa)
 
   
  0.540
Slin_1927
CMP/dCMP deaminase zinc-binding protein (186 aa)
   
   
  0.523
Slin_5963
ATP-dependent DNA helicase RecQ (736 aa)
   
      0.517
Slin_5465
RecQ family ATP-dependent DNA helicase (637 aa)
   
      0.517
Slin_0035
ATP-dependent DNA helicase RecQ (707 aa)
   
      0.517
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine (221 aa)
   
 
  0.513
Slin_5045
Ribonucleoside-diphosphate reductase (349 aa)
   
   
  0.509
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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