STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6258PFAM: N-6 DNA methylase; KEGG: vcm:VCM66_1707 putative DNA methylase HsdM. (787 aa)    
Predicted Functional Partners:
Slin_6260
PFAM: restriction modification system DNA specificity domain; KEGG: aeh:Mlg_1791 restriction modification system DNA specificity subunit.
 
 0.997
Slin_6264
PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicase; KEGG: shw:Sputw3181_1090 type III restriction enzyme, res subunit.
 
 
 0.980
Slin_3089
PFAM: restriction modification system DNA specificity domain; KEGG: efe:EFER_3081 specificity determinant for HsdM and HsdR (modular protein).
 
 
 0.976
Slin_1964
PFAM: Putative helicase A859L; KEGG: nha:Nham_4501 hypothetical protein.
  
 
 0.885
Slin_6259
PFAM: protein of unknown function DUF1016; KEGG: sbl:Sbal_3718 hypothetical protein.
       0.782
Slin_3086
Type I site-specific deoxyribonuclease; KEGG: glo:Glov_1416 EcoEI R domain protein; PFAM: EcoEI R domain protein; protein of unknown function DUF450; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase.
 
 
 0.732
Slin_0367
PFAM: protein of unknown function DUF450; KEGG: cjd:JJD26997_0689 DNA methylase-type I restriction-modification system.
  
 
 0.692
Slin_6261
Hypothetical protein.
       0.462
Slin_6262
Hypothetical protein.
       0.462
Slin_6257
KEGG: azo:azo1778 hypothetical protein.
       0.459
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.