STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6344KEGG: rfr:Rfer_0485 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Slin_3504
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: ccs:CCNA_03621 transcriptional regulator, AraC family.
  
     0.541
Slin_4237
Hypothetical protein.
  
     0.507
Slin_4301
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: similar to alpha-1 type VII collagen.
  
     0.489
Slin_6345
TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pzu:PHZ_c2654 putative intracellular protease/amidase.
       0.486
Slin_6343
KEGG: hypothetical protein LOC100206309.
       0.484
Slin_3502
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: ccs:CCNA_03621 transcriptional regulator, AraC family.
  
     0.483
Slin_4291
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: similar to hyalin.
  
     0.456
Slin_4238
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
  
     0.450
Slin_4605
KEGG: scl:sce0710 hypothetical protein.
  
     0.448
Slin_5213
PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_0856 TonB family protein.
  
     0.431
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.