STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6351PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bja:bll7636 hypothetical protein. (279 aa)    
Predicted Functional Partners:
Slin_6352
KEGG: hypothetical protein.
       0.558
Slin_6353
PFAM: acyl-ACP thioesterase; KEGG: dde:Dde_1334 acyl-ACP thioesterase-like.
       0.540
Slin_0049
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: avi:Avi_5583 oxidoreductase.
  
    0.496
Slin_3436
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: swd:Swoo_0362 oxidoreductase domain- containing protein.
 
    0.437
Slin_1890
KEGG: cja:CJA_3100 hypothetical protein.
 
     0.436
Slin_6564
KEGG: cja:CJA_3100 hypothetical protein.
 
     0.422
Slin_1925
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: ecy:ECSE_1367 putative dehydrogenase.
  
    0.417
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.