STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6352KEGG: hypothetical protein. (302 aa)    
Predicted Functional Partners:
Slin_6353
PFAM: acyl-ACP thioesterase; KEGG: dde:Dde_1334 acyl-ACP thioesterase-like.
 
     0.787
Slin_6351
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bja:bll7636 hypothetical protein.
       0.558
Slin_2248
KEGG: hypothetical protein.
  
     0.506
Slin_6354
PFAM: protein of unknown function UPF0126; KEGG: apl:APL_0168 hypothetical protein.
       0.463
Slin_3438
PFAM: Late embryogenesis abundant protein 2; SMART: Water Stress and Hypersensitive response domain protein; KEGG: hypothetical protein.
  
     0.447
Slin_5638
PFAM: SNARE associated Golgi protein; KEGG: GI13424 gene product from transcript GI13424- RA.
  
     0.426
Slin_4861
Transcriptional regulator, XRE family; KEGG: rpc:RPC_4690 hypothetical protein.
  
 
   0.413
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.