STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6368Response regulator receiver protein; PFAM: LytTr DNA-binding region; KEGG: hypothetical protein. (257 aa)    
Predicted Functional Partners:
Slin_6369
PFAM: protein of unknown function DUF1684; KEGG: ank:AnaeK_0098 protein of unknown function DUF1684.
       0.561
Slin_6367
KEGG: ccs:CCNA_00298 hypothetical protein.
       0.518
Slin_2916
KEGG: lch:Lcho_3567 hypothetical protein.
  
     0.496
Slin_1436
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: azc:AZC_0735 hypothetical protein.
  
     0.469
Slin_1793
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: sdn:Sden_1210 histidine kinase internal region.
  
   0.416
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.