STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6431PFAM: glycoside hydrolase family 43; KEGG: glycosyl hydrolase family protein 43; Belongs to the glycosyl hydrolase 43 family. (325 aa)    
Predicted Functional Partners:
Slin_6434
PFAM: glycoside hydrolase family 16; KEGG: glycosyl hydrolase.
 
   
 0.924
Slin_6432
PFAM: RagB/SusD domain protein.
 
     0.769
Slin_2329
PFAM: glycoside hydrolase family 43; KEGG: eca:ECA3847 putative xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.735
Slin_6430
PFAM: alpha-L-rhamnosidase; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.
       0.689
Slin_6433
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
 
     0.681
Slin_4787
PFAM: Pectinesterase; KEGG: xcb:XC_0125 pectin methylesterase-like protein.
 
     0.638
Slin_1231
Lysophospholipase L1 and related esterase-like protein; KEGG: hypothetical protein.
  
     0.576
Slin_1342
PFAM: glycoside hydrolase family 16; KEGG: cja:CJA_2759 beta glucanase, putative, glu16F.
 
   
 0.563
Slin_5374
PFAM: glycoside hydrolase family 28; KEGG: Os09g0439400; hypothetical protein; Belongs to the glycosyl hydrolase 28 family.
    0.550
Slin_2880
Hypothetical protein; KEGG: glycoside hydrolase family 5 protein.
  
 0.523
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.