STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6471PFAM: Sel1 domain protein repeat-containing protein; TPR repeat-containing protein; peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; Sel1 domain protein repeat-containing protein; KEGG: SLEI family protein. (1274 aa)    
Predicted Functional Partners:
Slin_6467
PFAM: peptidase C14 caspase catalytic subunit p20; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: mno:Mnod_2431 peptidase C14 caspase catalytic subunit P20.
 
   
 0.891
Slin_3025
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: hypothetical protein.
 
 
 0.788
Slin_2220
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: mno:Mnod_2431 peptidase C14 caspase catalytic subunit P20.
 
 
 0.781
Slin_6469
PFAM: peptidase M48 Ste24p; KEGG: pmy:Pmen_0539 peptidase M48, Ste24p.
     
 0.732
Slin_5584
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: TPR Domain containing protein.
 
     0.730
Slin_6470
Hypothetical protein.
       0.727
Slin_6468
Hypothetical protein.
       0.608
Slin_6466
Hypothetical protein.
       0.571
Slin_6465
Hypothetical protein.
       0.527
Slin_6464
Hypothetical protein.
       0.517
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.