STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6482KEGG: ent:Ent638_4239 virulence protein SrfB. (1048 aa)    
Predicted Functional Partners:
Slin_6480
KEGG: dds:Ddes_1314 virulence factor SrfC-like protein.
  
 0.926
Slin_6478
KEGG: rsq:Rsph17025_4051 hypothetical protein.
  
  
 0.723
Slin_6481
KEGG: hypothetical protein.
       0.718
Slin_6483
Hypothetical protein.
       0.671
Slin_0302
PFAM: Peptidoglycan-binding lysin domain; transport- associated; SMART: Peptidoglycan-binding LysM; KEGG: aci:ACIAD0873 LysM domain/BON superfamily protein.
  
     0.525
Slin_6479
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: gme:Gmet_0751 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
       0.521
Slin_5747
KEGG: shm:Shewmr7_0088 hypothetical protein.
  
  
 0.496
Slin_6477
Hypothetical protein.
       0.470
Slin_6476
Hypothetical protein.
       0.400
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.