STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6502PFAM: protein of unknown function DUF490; KEGG: xau:Xaut_4225 hypothetical protein. (1691 aa)    
Predicted Functional Partners:
Slin_6501
PFAM: surface antigen (D15); KEGG: psa:PST_1545 surface antigen family outer membrane protein.
 
   
 0.958
Slin_1362
Hypothetical protein.
  
     0.627
Slin_5093
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; Sel1 domain protein repeat-containing protein; KEGG: gme:Gmet_1506 tetratricopeptide TPR_4.
 
    0.618
Slin_0499
KEGG: scl:sce3892 outer membrane protein.
  
     0.584
Slin_4799
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: rfe:RF_0310 TPR repeat-containing protein.
  
     0.577
Slin_2248
KEGG: hypothetical protein.
  
     0.565
Slin_1533
3-oxoacid CoA-transferase, B subunit; KEGG: dar:Daro_1021 butyryl-CoA:acetate CoA transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; 3- oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; Belongs to the 3-oxoacid CoA-transferase family.
   
    0.555
Slin_1424
PFAM: RagB/SusD domain protein; KEGG: bpt:Bpet0601 filamentous hemagglutinin/adhesin.
  
     0.541
Slin_5954
KEGG: neu:NE1230 hypothetical protein.
  
     0.525
Slin_5097
PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: ppg:PputGB1_0186 hypothetical protein.
  
     0.504
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.