STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6505PFAM: PfkB domain protein; KEGG: dal:Dalk_2824 RfaE bifunctional protein. (333 aa)    
Predicted Functional Partners:
Slin_3466
rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
  
  0.997
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate; Belongs to the SIS family. GmhA subfamily.
  
 0.985
hldD
ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
 
 
 0.977
Slin_5528
TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; histidinol-phosphate phosphatase family protein; KEGG: nis:NIS_1450 D-glycero-D-manno-heptose 1,7- bisphosphate phosphatase.
 
  
 0.977
Slin_2563
KEGG: dal:Dalk_1695 sugar isomerase (SIS).
 
  
 0.976
Slin_3107
TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: azo:azo1807 heptose phosphatase.
 
  
 0.974
Slin_6380
PFAM: PfkB domain protein; KEGG: sdn:Sden_0709 bifunctional heptose 7- phosphate kinase/heptose 1-phosphate adenyltransferase.
  
  
 
0.929
Slin_2827
PFAM: glycosyl transferase family 9; KEGG: bba:Bd2366 heptosyltransferase.
 
  
 0.795
Slin_6413
PFAM: glycosyl transferase family 9; KEGG: dvm:DvMF_3136 lipopolysaccharide heptosyltransferase II.
 
  
 0.795
Slin_3108
PFAM: glycosyl transferase family 9; KEGG: nmu:Nmul_A1791 glycosyl transferase family protein.
 
  
 0.789
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.