STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6546KEGG: cja:CJA_0831 cellulose or protein binding domain. (421 aa)    
Predicted Functional Partners:
Slin_6545
PFAM: NUDIX hydrolase; KEGG: ara:Arad_1531 hydrolase protein.
       0.724
Slin_3971
KEGG: hypothetical protein.
  
     0.592
Slin_5067
PFAM: oxidoreductase domain protein; KEGG: mlo:mll4991 myo-inositol dehydrogenase (IdhA).
  
     0.586
Slin_0047
PFAM: oxidoreductase domain protein; KEGG: ara:Arad_9633 myo-inositol dehydrogenase protein.
  
     0.564
Slin_6547
Hypothetical protein.
       0.553
Slin_0604
PFAM: oxidoreductase domain protein; KEGG: ade:Adeh_1063 oxidoreductase-like protein.
  
     0.548
Slin_6214
PFAM: oxidoreductase domain protein; KEGG: bcs:BCAN_A2095 hypothetical protein.
  
     0.533
Slin_1351
PFAM: putative esterase; KEGG: scl:sce0967 hypothetical protein.
  
     0.497
Slin_0048
Hypothetical protein.
  
     0.492
Slin_1177
PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2151 hypothetical protein.
  
     0.478
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.