STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6554KEGG: gbm:Gbem_1581 hypothetical protein. (166 aa)    
Predicted Functional Partners:
Slin_6553
TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pla:Plav_2092 quinone oxidoreductase putative PIG3.
       0.547
Slin_1094
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5644 carbohydrate ABC transporter.
  
     0.513
Slin_0317
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC- type glycine betaine transport system; KEGG: reu:Reut_A1451 binding-protein dependent transport system inner membrane protein.
 
     0.488
Slin_2739
Hypothetical protein.
  
     0.437
Slin_1095
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: sfu:Sfum_1390 ABC transporter related.
  
     0.425
Slin_6298
KEGG: tgr:Tgr7_2098 hypothetical protein.
  
     0.419
Slin_3836
PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: zinc-containing alcohol dehydrogenase (ADH).
  
     0.416
Slin_1846
KEGG: sat:SYN_02193 putative cytoplasmic protein.
  
     0.414
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.